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Input coding sequences
A gene can be divided to
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PAM sequence:
NGG
NGG or NAG
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Scoring Function:
cfd_funct
gold_off
moff
CRISPR Net
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ucrispr
CrisprMIT
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Optimization criterion:
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Genome assembly:
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DEUTEROSTOMES
Ciona (ci1)
Ciona (ci2)
Lancelet (braFlo1)
Urchin (strPur1)
Urchin (strPur2)
INSECTS
A. gambiae (anoGam1)
A. mellifera (apiMel1)
A. mellifera (apiMel2)
D. ananassae (droAna1)
D. ananassae (droAna2)
D. ananassae (droAna3)
D. erecta (droEre1)
D. erecta (droEre2)
D. grimshawi (droGri1)
D. grimshawi (droGri2)
D. melanogaster (dm1)
D. melanogaster (dm2)
D. melanogaster (dm3)
D. melanogaster (dm6)
D. mojavensis (droMoj1)
D. mojavensis (droMoj2)
D. mojavensis (droMoj3)
D. persimilis (droPer1)
D. pseudoobscura (dp2)
D. pseudoobscura (dp3)
D. pseudoobscura (dp4)
D. sechellia (droSec1)
D. simulans (droSim1)
D. virilis (droVir1)
D. virilis (droVir2)
D. virilis (droVir3)
D. willistoni (droWil1)
D. yakuba (droYak1)
D. yakuba (droYak2)
T. castaneum (triCas2)
NEMATODES
C. brenneri (caePb1)
C. brenneri (caePb2)
C. briggsae (cb3)
C. elegans (ce10)
C. elegans (ce11)
C. elegans (ce2)
C. elegans (ce4)
C. elegans (ce6)
C. japonica (caeJap1)
C. remanei (caeRem2)
C. remanei (caeRem3)
P. pacificus (priPac1)
PLANTS
Aegilops tauschii (ASM34733v1)
Amborella trichopoda (AMTR1.0)
Arabidopsis lyrata (Alyr_1.0)
Arabidopsis thaliana (TAIR10)
Beta vulgaris (RefBeet-1.2.2)
Brachypodium distachyon (v1.0)
Brassica napus (AST_PRJEB5043_v1)
Brassica oleracea (BOL_v2.1)
Brassica napus (AST_PRJEB5043_v1)
Brassica rapa (IVFCAASv1)
Chlamydomonas reinhardtii (v3.1)
Cyanidioschyzon merolae (ASM9120v1)
Glycine max (V1.0)
Hordeum vulgare (ASM32608v1)
Leersia perrieri (Lperr_V1.4)
Medicago truncatula (MedtrA17_4.0)
Musa acuminata (MA1)
Oryza barthii (O.barthii_v1)
Oryza brachyantha (Oryza_brachyantha.v1.4b)
Oryza glaberrima (Oryza_glaberrima_V1)
Oryza glumaepatula (Oryza_glumaepatula_v1.5)
Oryza indica (ASM465v1)
Oryza longistaminata (O_longistaminata_v1.0)
Oryza meridionalis (Oryza_meridionalis_v1.3)
Oryza nivara (Oryza_nivara_v1.0)
Oryza punctata (Oryza_punctata_v1.2)
Oryza rufipogon (OR_W1943)
Oryza sativa (IRGSP-1.0)
Ostreococcus lucimarinus (ASM9206v1)
Physcomitrella patens (ASM242v1)
Populus trichocarpa (JGI2.0)
Prunus persica (Prupe1_0)
Selaginella moellendorffii (v1.0)
Setaria italica (JGIv2.0)
Solanum lycopersicum (SL2.50)
Solanum tuberosum (SolTub_3.0)
Sorghum bicolor (Sorbi1)
Theobroma cacao (Theobroma_cacao_20110822)
Trifolium pratense (Trpr)
Triticum aestivum (TGACv1)
Triticum urartu (ASM34745v1)
Vitis vinifera (IGGP_12x)
Zea mays (AGPv4)
VERTEBRATES
Alpaca (vicPac1)
Alpaca (vicPac2)
American alligator (allMis1)
Armadillo (dasNov3)
Atlantic cod (gadMor1)
Baboon (papAnu2)
Baboon (papHam1)
Bonobo (panPan1)
Brown kiwi (aptMan1)
Budgerigar (melUnd1)
Bushbaby (otoGar1)
Bushbaby (otoGar3)
Cat (felCat3)
Cat (felCat4)
Cat (felCat5)
Cat (felCat8)
Chicken (galGal2)
Chicken (galGal3)
Chicken (galGal4)
Chicken (galGal5)
Chimp (panTro1)
Chimp (panTro2)
Chimp (panTro3)
Chimp (panTro4)
Chimp (panTro5)
Chinese hamster (criGri1)
Coelacanth (latCha1)
Cow (bosTau2)
Cow (bosTau3)
Cow (bosTau4)
Cow (bosTau6)
Cow (bosTau7)
Cow (bosTau8)
Crab-eating macaque (macFas5)
Dog (canFam1)
Dog (canFam3)
Dolphin (turTru2)
Duck (anasPlatyrhynchos1.0)
Elephant (loxAfr3)
Elephant shark (calMil1)
Ferret (musFur1)
Fugu (fr1)
Fugu (fr2)
Fugu (fr3)
Gibbon (nomLeu1)
Gibbon (nomLeu2)
Gibbon (nomLeu3)
Gorilla (gorGor3)
Gorilla (gorGor4)
Gorilla (gorGor5)
Guinea pig (cavPor2)
Guinea pig (cavPor3)
Hedgehog (eriEur1)
Hedgehog (eriEur2)
Horse (equCab1)
Horse (equCab2)
Human (hg16)
Human (hg18)
Human (hg19)
Human (hg38)
Kangaroo rat (dipOrd1)
Lamprey (petMar1)
Lamprey (petMar2)
Lizard (anoCar1)
Lizard (anoCar2)
Malayan flying lemur (galVar1)
Manatee (triMan1)
Marmoset (calJac1)
Marmoset (calJac3)
Medaka (oryLat2)
Medium ground finch (geoFor1)
Megabat (pteVam1)
Microbat (myoLuc2)
Minke whale (balAcu1)
Mouse (mm10)
Mouse (mm7)
Mouse (mm8)
Mouse (mm9)
Mouse lemur (micMur1)
Mouse lemur (micMur2)
Naked mole-rat (hetGla1)
Naked mole-rat (hetGla2)
Nile tilapia (oreNil2)
Opossum (monDom2)
Opossum (monDom4)
Opossum (monDom5)
Orangutan (ponAbe2)
Painted turtle (chrPic1)
Panda (ailMel1)
Pig (susScr2)
Pig (susScr3)
Pika (ochPri2)
Pika (ochPri3)
Platypus (ornAna1)
Platypus (ornAna2)
Rabbit (oryCun2)
Rat (rn4)
Rat (rn5)
Rat (rn6)
Rhesus (rheMac2)
Rhesus (rheMac3)
Rhesus (rheMac8)
Rock hyrax (proCap1)
Sheep (oviAri1)
Sheep (oviAri3)
Shrew (sorAra1)
Shrew (sorAra2)
Sloth (choHof1)
Squirrel (speTri2)
Squirrel monkey (saiBol1)
Stickleback (gasAcu1)
Tarsier (tarSyr1)
Tarsier (tarSyr2)
Tasmanian devil (sarHar1)
Tenrec (echTel1)
Tenrec (echTel2)
Tetraodon (tetNig1)
Tetraodon (tetNig2)
Tree shrew (tupBel1)
Turkey (melGal1)
Wallaby (macEug2)
White rhinoceros (cerSim1)
X. tropicalis (xenTro1)
X. tropicalis (xenTro2)
X. tropicalis (xenTro3)
X. tropicalis (xenTro7)
Zebra finch (taeGut1)
Zebra finch (taeGut2)
Zebrafish (danRer10)
Zebrafish (danRer3)
Zebrafish (danRer4)
Zebrafish (danRer5)
Zebrafish (danRer6)
Zebrafish (danRer7)
VIRUSES
Ebola Virus (eboVir3)
YEAST
S. cerevisiae (sacCer1)
S. cerevisiae (sacCer2)
S. cerevisiae (sacCer3)
230 genome assemblies are available, including vertebrates, plants, yeast, insects and deuterostomes!
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